PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g01550.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 239aa    MW: 27503.6 Da    PI: 5.7797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g01550.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-1017392346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W++Ia++++ gRt++++k++w++
   Vang10g01550.3 17 RWSKIAQHLP-GRTDNEIKNYWRT 39
                     6*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.208145IPR017930Myb domain
SuperFamilySSF466898.58E-81445IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-111741IPR009057Homeodomain-like
CDDcd001673.20E-71739No hitNo description
PfamPF002491.2E-71739IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLVCYIYLDF YFFNDCRWSK IAQHLPGRTD NEIKNYWRTR IQKQARHLKI ETDSREFQEL  60
VRRFWMPRLL QKVKESSSSS AMSIQNQAIP LVLDDGVSQQ STIGTIPWQG ACVSMNGGSP  120
TYMDQHEQNS DSEHNSGSCI SFSESANMPK VSHHFGHTMD QFHSLSNNDF GTYSYDPYHV  180
NDNAYEMETF KAATAKVAQD VQYPIADCQT AGTDWLSNDF ACTMWNIDEL WQFSKLQK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510156.11e-159PREDICTED: transcription factor MYB24-like
TrEMBLA0A0L9THX61e-168A0A0L9THX6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QWQ81e-168A0A0S3QWQ8_PHAAN; Uncharacterized protein
STRINGGLYMA08G04670.11e-119(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-25myb domain protein 62